| MirGeneDB ID | Ami-Mir-1416 |
|---|
| Family name |
MIR-1416 (all species) |
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| Species |
American alligator (Alligator mississippiensis) |
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| MiRBase ID |
ami-mir-1416
|
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| Paralogues |
|
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| Orthologues |
Cli-Mir-1416
Cpi-Mir-1416
Gga-Mir-1416
Oan-Mir-1416
Tgu-Mir-1416
|
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| Node of Origin (locus) |
Amniota
|
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| Node of Origin (family) |
Amniota
|
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Genome context
(GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017713772.1: 28059847-28059906 [-]
UCSC
|
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| Seed |
CCUUAAC |
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Precursor
(pre-Mir +30nt flank) |
AGGAAAUCAAAAGUGAUGGCUGACACUCCUUCCUUAACUCAUACCGCUGUGCCUGCCUUCUUUCUUUCACAAUUGUGUGAGUUGAGUUCAGAGUGUCAGUCCAACCCUGCUUUGCUCCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGGAAAUCAAAAGUGAU--| CUUC CGC CCUGCCU
GGCUGACACUC CUUAACUCAUAC UGUG U
CUGACUGUGAG GAGUUGAGUGUG ACAC C
AACCUCGUUUCGUCCCAAC^ ACUU UUA UUUCUUU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ami-Mir-1416_5p |
| mirBase accession | MIMAT0038316 |
|---|
| Sequence |
0- UCCUUAACUCAUACCGCUGUGC -22
Get sequence
|
|---|
| Star sequence |
Ami-Mir-1416_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- ACAAUUGUGUGAGUUGAGUUCA -60
Get sequence
|
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