| MirGeneDB ID | Ami-Mir-9598 |
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| Family name |
MIR-9598 (all species) |
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| Species |
American alligator (Alligator mississippiensis) |
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| MiRBase ID |
ami-mir-9598
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A. mississippiensis
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| Node of Origin (family) |
A. mississippiensis
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Genome context
(GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017712978.1: 1774372-1774428 [+]
UCSC
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| Seed |
AGUACUA |
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Precursor
(pre-Mir +30nt flank) |
CUGUCUACACCCUCUUCCCUUCUCCCCCCCCUUUCAAAAUUCUAGAUCUGCCUAUGGGCAUGGGUAGUACUAGGAUUUUGGAAAGGGGGUGGGAGGGCACAUGGUGAGGUGCAUCAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUGUCUACACCCUCUUCCC- - -| AU UAUG
UUCUCCC CCCCCUUU CAAAAUUCUAG CUGCC G
GGGAGGG GGGGGAAA GUUUUAGGAUC GAUGG G
UACUACGUGGAGUGGUACAC U G^ AU GUAC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Star sequence |
Ami-Mir-9598_5p* |
| mirBase accession | MIMAT0038340 |
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| Sequence |
0- CUUUCAAAAUUCUAGAUCUGCC -22
Get sequence
|
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| Mature sequence |
Ami-Mir-9598_3p |
| mirBase accession | MIMAT0038341 |
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| Sequence |
34- UAGUACUAGGAUUUUGGAAAGGG -57
Get sequence
|
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