| MirGeneDB ID | Ami-Mir-9605 |
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| Family name |
MIR-9605 (all species) |
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| Species |
American alligator (Alligator mississippiensis) |
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| MiRBase ID |
ami-mir-9605
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A. mississippiensis
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| Node of Origin (family) |
A. mississippiensis
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Genome context
(GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017708624.1: 22946239-22946295 [+]
UCSC
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| Seed |
GGAGUCA |
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Precursor
(pre-Mir +30nt flank) |
AUGAAAAACAGUGUGUCCCAAAUACACUGCUGGAGUCAGUGGGUACAAGUCUGUGGAGCUGAUAGAGUUGUACAUGUUGACACAAGCAGUGAAUUUGGCCGAGCUUUCAAGAUGAAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUGAAAAACAGUGUGUC--| A GGA GU G G GUGGA
CCAAAU CACUGCU GUCA G GUACAA UCU \
GGUUUA GUGACGA CAGU U CAUGUU AGA G
AAAGUAGAACUUUCGAGCC^ A ACA UG A G UAGUC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
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| Mature sequence |
Ami-Mir-9605_5p |
| mirBase accession | MIMAT0038354 |
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| Sequence |
0- UGGAGUCAGUGGGUACAAGUCU -22
Get sequence
|
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| Co-mature sequence |
Ami-Mir-9605_3p |
| mirBase accession | MIMAT0038355 |
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| Sequence |
35- AGUUGUACAUGUUGACACAAGC -57
Get sequence
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