| MirGeneDB ID | Ami-Mir-9606 |
|---|
| Family name |
MIR-9606 (all species) |
|---|
| Species |
American alligator (Alligator mississippiensis) |
|---|
| MiRBase ID |
ami-mir-9606
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
A. mississippiensis
|
|---|
| Node of Origin (family) |
A. mississippiensis
|
|---|
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017709534.1: 102312-102374 [-]
UCSC
|
|---|
| Seed |
AAGGAUU |
|---|
Precursor
(pre-Mir +30nt flank) |
UAACCAUAAACUUCCUGUGGAAUGCAGAGGCAAGGAUUUCUUAGGGUGAUAUCUUUUAAUUAUCUUUUCUUAUCACUCUAAUAAAUCCUUGCCUCUUCGACACCAUCAUUUCUGCACCUGACU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UAACCAUAAACUUCCUG- AA-| C C AUCUUUUAAU
UGG UG AGAGGCAAGGAUUU UUAGGGUGAU \
ACC GC UCUCCGUUCCUAAA AAUCUCACUA U
UCAGUCCACGUCUUUACU ACA^ U U UUCUUUUCUA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Ami-Mir-9606_5p |
| mirBase accession | MIMAT0038356 |
|---|
| Sequence |
0- CAAGGAUUUCUUAGGGUGAU -20
Get sequence
|
|---|
| Co-mature sequence |
Ami-Mir-9606_3p |
| mirBase accession | MIMAT0038357 |
|---|
| Sequence |
42- UCACUCUAAUAAAUCCUUGCC -63
Get sequence
|
|---|
