MirGeneDB 3.0
MirGeneDB ID

Aqu-Mir-2019

Family name MIR-2019 (all species)
Species Amphimedon (Amphimedon queenslandica)
MiRBase ID aqu-mir-2019
Paralogues
Orthologues Emu-Mir-2019 
Node of Origin (locus) Silicispongia
Node of Origin (family) Silicispongia
Genome context
(GCF_000090795.1_v1.0_SPONGE)		 NW_003546402.1: 48971-49077 [+] Ensembl
Seed AAGUGAU
Precursor
(pre-Mir +30nt flank)		 
ACGCCGUGAGACUGCGCCCGCUACCGAUUCAAAGUGAUCGGGUUGCCGUCUGAGCUCUAGCUAGCCAUACCCAGGCCUUGUUAACUUAACCAGUCCUAGAGAAGGCUCUGGCUCACACGGUAGCUUGCUCACUUAGAAACGGCCGAGGCGCUACUGCAAGGAGAACA
Get precursor sequence
Structure
        10        20           30        40        50        60        70        80   
ACGCCGUGAGACUGCGCCC   A---|  A   A      U           C  AGCUCUAGCUAGCCAUACCCAGGCCUUGUU 
                   GCU    CCG UUC AAGUGA CGGGUUGCCGU UG                              \
                   CGG    GGC AAG UUCACU GUUCGAUGGCA AC                              A
ACAAGAGGAACGUCAUCG-   AGCC^  A   A      C           C  UCGGUCUCGGAAGAGAUCCUGACCAAUUCA 
     160       150        140       130       120       110       100        90
Deep sequencing
Go to detailed chart
CommentThis miRNA is also present in hexactinellid sponges (Sperling et al. 2010)
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Co Ju Pr
Mature sequence

Aqu-Mir-2019_5p
mirBase accessionMIMAT0009696
Sequence 
0- AAAGUGAUCGGGUUGCCGUCUG -22
Get sequence
Star sequence

Aqu-Mir-2019_3p*
mirBase accessionMIMAT0009697
Sequence 
85- CACGGUAGCUUGCUCACUUAGA -107
Get sequence