| MirGeneDB ID | Asu-Mir-5357 |
|---|
| Family name |
MIR-5357 (all species) |
|---|
| Species |
Large roundworm (Ascaris suum) |
|---|
| MiRBase ID |
asu-mir-5357
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
A.suum
|
|---|
| Node of Origin (family) |
A.suum
|
|---|
Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold420: 529272-529329 [-]
|
|---|
| Seed |
AUGGACA |
|---|
Precursor
(pre-Mir +30nt flank) |
ACGCCGCUCUCACCCUUCUACUCGACUCCUCACCCGAAUCGUUGUUCAUUUGUAUUGCUUGCCUCAAAUGGACAACGAUUUGGGUGAGGAGUUGAGCAGAAUUAUCUCCAGUGAGAUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACGCCGCUCUCACCCUU--| A UAUUG
CU CUCGACUCCUCACCCGAAUCGUUGUUCAUUUG C
GA GAGUUGAGGAGUGGGUUUAGCAACAGGUAAAC U
AUAGAGUGACCUCUAUUAA^ C UCCGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ce |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Asu-Mir-5357_5p* |
| mirBase accession | MIMAT0021576 |
|---|
| Sequence |
0- CACCCGAAUCGUUGUUCAUUUG -22
Get sequence
|
|---|
| Mature sequence |
Asu-Mir-5357_3p |
| mirBase accession | MIMAT0021577 |
|---|
| Sequence |
36- AAUGGACAACGAUUUGGGUGAG -58
Get sequence
|
|---|
