| MirGeneDB ID | Asu-Mir-86 |
|---|
| Family name |
MIR-86 (all species) |
|---|
| Species |
Large roundworm (Ascaris suum) |
|---|
| MiRBase ID |
asu-mir-86
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cbr-Mir-86
Cel-Mir-86
|
|---|
| Node of Origin (locus) |
Chromadorea
|
|---|
| Node of Origin (family) |
Chromadorea
|
|---|
Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold576: 325320-325380 [+]
|
|---|
| Seed |
AAGUGAA |
|---|
Precursor
(pre-Mir +30nt flank) |
UCCACGGAAAAAUGCAGGUGGCAGGCCAGUUAAGUGAAUGCUUUGCCACAGUCUUAGCAAUGAAAUAAGCUGGGCUGAGGUUCACUUAGGCUGGAGGCUCCAACCAAAGUCAAACCCCAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCCACGGAAAAAUGCAGGU---| AGG - G U A CUUAGCA
GGC CCAGU UAAGUGAAU CUU GCC CAGU A
UCG GGUCG AUUCACUUG GAG CGG GUCG U
CUACCCCAAACUGAAACCAACC^ GA- G - U - AAUAAAG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Ce |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Asu-Mir-86_5p |
| mirBase accession | MIMAT0021479 |
|---|
| Sequence |
0- UAAGUGAAUGCUUUGCCACAGUCU -24
Get sequence
|
|---|
| Star sequence |
Asu-Mir-86_3p* |
| mirBase accession | MIMAT0021480 |
|---|
| Sequence |
39- CUGGGCUGAGGUUCACUUAGGC -61
Get sequence
|
|---|
