Mir-9-o17

MirGeneDB ID

Asu-Mir-9-o17

Family name

MIR-9 (all species)

Species

Large roundworm (Ascaris suum)

MiRBase ID

asu-mir-9

Paralogues

Asu-Mir-9-o18

Orthologues

Agr-Mir-9 Bfl-Mir-9 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dgr-Mir-9 Eba-Mir-9 Egr-Mir-9 Esc-Mir-9 Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Llo-Mir-9 Mgi-Mir-9-P17 Mom-Mir-9 Npo-Mir-9 Obi-Mir-9 Ofu-Mir-9 Ovu-Mir-9 Pau-Mir-9 Pdu-Mir-9 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sma-Mir-9 Snu-Mir-9 Spu-Mir-9 War-Mir-9 Xbo-Mir-9

Node of Origin (locus)

A.suum

Node of Origin (family)

Bilateria

Genome context
(ASU_PRJNA80881_plustraces)

Scaffold703: 302189-302252 [+]

Seed

CUUUGGU

Precursor
(pre-Mir +30nt flank)

UGCACAGGUUUUUCAUCGCAGUUGGCAAUUUCUUUGGUUAUCUAGCUGUAUGAGUACCGCGUUUAGUCGUCAUAAAGCUGGACGACCGAAGUAAUGGCCGCUGAUCGUAUGCCAUAUCCGACAU

Get precursor sequence

Structure

        10           20        30        40        50        60 
UGCACAGGUUUUUCAUCG---|   U   A   U       UA       G     GUACCGC 
                     CAGU GGC AUU CUUUGGU  UCUAGCU UAUGA       G
                     GUCG CCG UAA GAAGCCA  AGGUCGA AUACU       U
UACAGCCUAUACCGUAUGCUA^   -   G   U       GC       A     GCUGAUU 
  120       110       100         90        80        70