Mir-193-P1e

MirGeneDB ID

Bfl-Mir-193-P1e

Family name

MIR-193 (all species)

Species

Florida lancelet (Branchiostoma floridae)

MiRBase ID

bfl-mir-193a

Paralogues

Bfl-Mir-193-P1j Bfl-Mir-193-P1k Bfl-Mir-193-P1o1a Bfl-Mir-193-P1o1b Bfl-Mir-193-P1o2

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Bge-Mir-193-P1 Bla-Mir-193-P1e Cbr-Mir-193-P1-v1 Cel-Mir-193-P1-v1 Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dmo-Mir-193-P1-v1 Dpu-Mir-193-P1 Dsi-Mir-193-P1-v1 Dya-Mir-193-P1-v1 Eba-Mir-193-P1 Esc-Mir-193-P1 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Isc-Mir-193-P1 Lgi-Mir-193-P1 Lhy-Mir-193-P1 Mgi-Mir-193-P1 Mom-Mir-193-P1 Npo-Mir-193-P1 Obi-Mir-193-P1 Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pau-Mir-193-P1 Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rph-Mir-193-P1 Snu-Mir-193-P1 Tca-Mir-193-P1 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

Branchiostoma

Node of Origin (family)

Bilateria

Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)

NC_049981.1: 21537097-21537155 [-] UCSC

Seed

ACUGGCC

Precursor
(pre-Mir +30nt flank)

GAACUUAGUCAGACAGCACGCAUGCUCAAUAAAGACUUCAGGGGACAGUCGGUGUCUAGCAGUUUCCUACUGGCCCCUUAAGUCCCGGUUGACGUUCGUGAAUCGGUCAAGCGUACCUC

Get precursor sequence

Structure

        10           20        30        40        50         
GAACUUAGUCAGACAGC---|  C   C     AAA     C     A    C  UGUCUA 
                    ACG AUG UCAAU   GACUU AGGGG CAGU GG      \
                    UGC UGC AGUUG   CUGAA UCCCC GUCA CC      G
CUCCAUGCGAACUGGCUAAG^  U   -     GCC     U     G    U  UUUGAC 
       110       100         90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

UGUG in loop

Tissue expression

To

Star sequence

Bfl-Mir-193-P1e_5p* (predicted)

mirBase accession

None

Sequence

0- AAAGACUUCAGGGGACAGUCGG -22

Get sequence

Mature sequence

Bfl-Mir-193-P1e_3p (predicted)

mirBase accession

MIMAT0009490

Sequence

37- UACUGGCCCCUUAAGUCCCGGU -59

Get sequence