| MirGeneDB ID | Bfl-Mir-2068 |
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| Family name |
MIR-2068 (all species) |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
bfl-mir-2068
|
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| Paralogues |
|
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| Orthologues |
Bla-Mir-2068
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Branchiostoma
|
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049980.1: 24867355-24867411 [+]
UCSC
|
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| Seed |
UUCCUAU |
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Precursor
(pre-Mir +30nt flank) |
UUGGAUACCCAAGACUGCUGGUUUGUUCUUCUUCCUAUGCACAUCUGUCCUUGUAAGCUGGAGGAGGACAUGUGUGCAUAGGGAAGAGAUCAGCUAGCCAAAUCUGCAUCCACCAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGGAUACCCAAGACUG---| U U UC C GUAAG
CUGGUU G UCU UUCCUAUGCACAU UGUCCUU \
GAUCGA C AGA AGGGAUACGUGUG ACAGGAG C
AGACCACCUACGUCUAAACC^ - U GA U GAGGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bfl-Mir-2068_5p |
| mirBase accession | MIMAT0009996 |
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| Sequence |
0- CUUCCUAUGCACAUCUGUCCUU -22
Get sequence
|
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| Star sequence |
Bfl-Mir-2068_3p* |
| mirBase accession | MIMAT0019170 |
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| Sequence |
35- GGACAUGUGUGCAUAGGGAAGA -57
Get sequence
|
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