| MirGeneDB ID | Bfl-Mir-4057 |
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| Family name |
MIR-4057 (all species) |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
bfl-mir-4057-1
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| Paralogues |
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| Orthologues |
Bla-Mir-4057
Cin-Mir-4057
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| Node of Origin (locus) |
Chordata
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| Node of Origin (family) |
Chordata
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049979.1: 13086188-13086246 [-]
UCSC
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| Seed |
UUGCUAC |
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Precursor
(pre-Mir +30nt flank) |
ACCCCCCUCCCACCCUUGCUGUGGGUGCCUAUCUUGGUGGUGUAGCACAUGUGAGAUGUGAGCCACAUUUGCUACGGCCACCAAGAUCUGUGCCAGCAGUAUACCUCUUCUUUCUUCCU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
ACCCCCCUCCCACCCUU-- G UG CU -| C UGAGAU
GCUGU GG C AUCUUGGUGG UGUAGCA AUG G
UGACG CC G UAGAACCACC GCAUCGU UAC U
UCCUUCUUUCUUCUCCAUA A GU UC G^ U ACCGAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Bfl-Mir-4057_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AUCUUGGUGGUGUAGCACAUG -21
Get sequence
|
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| Mature sequence |
Bfl-Mir-4057_3p |
| mirBase accession | MIMAT0020465 |
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| Sequence |
37- UUUGCUACGGCCACCAAGAUCU -59
Get sequence
|
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