| MirGeneDB ID | Bfl-Mir-4859 |
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| Family name |
MIR-4859 (all species) |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
bfl-mir-4859
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| Paralogues |
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| Orthologues |
Bla-Mir-4859
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| Node of Origin (locus) |
Branchiostoma
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| Node of Origin (family) |
Branchiostoma
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049979.1: 14957279-14957338 [+]
UCSC
|
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| Seed |
GCAGCGA |
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Precursor
(pre-Mir +30nt flank) |
CUCCUGGACUCCAUCUUUGGCCUGUUGGAAAGCAGCGAGCAUUACGGUCAUUCUGACGCUGGAGAAUAUGACAGUAAUGCCCGCUGACUUCUAAUGGAGCUUCCUCUCAUCACUUCUGGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUCCUGGACUCCAUCUUU- -| AG A G UCUGACG
GGC CUGUUGGAA CAGCG GCAUUAC GUCAU C
UCG GGUAAUCUU GUCGC CGUAAUG CAGUA U
AGGUCUUCACUACUCUCCU A^ CA C A UAAGAGG
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Bfl-Mir-4859_5p |
| mirBase accession | MIMAT0020086 |
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| Sequence |
0- AGCAGCGAGCAUUACGGUCAUU -22
Get sequence
|
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| Co-mature sequence |
Bfl-Mir-4859_3p |
| mirBase accession | MIMAT0020087 |
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| Sequence |
38- UGACAGUAAUGCCCGCUGACUU -60
Get sequence
|
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