| MirGeneDB ID | Bfl-Mir-4874 |
|---|
| Family name |
MIR-4874 (all species) |
|---|
| Species |
Florida lancelet (Branchiostoma floridae) |
|---|
| MiRBase ID |
bfl-mir-4874
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bla-Mir-4874
|
|---|
| Node of Origin (locus) |
Branchiostoma
|
|---|
| Node of Origin (family) |
Branchiostoma
|
|---|
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049983.1: 19101237-19101297 [-]
UCSC
|
|---|
| Seed |
GUUUGUA |
|---|
Precursor
(pre-Mir +30nt flank) |
GAGAUAGGCAUUGCCGUUUUAUCCCCGCCCAGUUUGUAGCAUCCAGCUGAGCUGGCAGACCUGCAGCAGCUGGCUGGUUGGUGCAAACAGGGGGAGGAUGGACCUCACUUCAAGGCCAGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAGAUAGGCAUUGCCGU-- -| G A G U G GGCAGA
UUUAUCC CC CCC GUUUGUA CA CCAGCU AGCU C
AGGUAGG GG GGG CAAACGU GU GGUCGG UCGA C
CCGACCGGAACUUCACUCC A^ - A G U - CGACGU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Bfl-Mir-4874_5p |
| mirBase accession | MIMAT0020453 |
|---|
| Sequence |
0- AGUUUGUAGCAUCCAGCUGAGCU -23
Get sequence
|
|---|
| Co-mature sequence |
Bfl-Mir-4874_3p |
| mirBase accession | MIMAT0020454 |
|---|
| Sequence |
39- CUGGCUGGUUGGUGCAAACAGG -61
Get sequence
|
|---|
