| MirGeneDB ID | Bfl-Mir-4891 |
|---|
| Family name |
MIR-4891 (all species) |
|---|
| Species |
Florida lancelet (Branchiostoma floridae) |
|---|
| MiRBase ID |
bfl-mir-4891
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bla-Mir-4891
|
|---|
| Node of Origin (locus) |
Branchiostoma
|
|---|
| Node of Origin (family) |
Branchiostoma
|
|---|
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049980.1: 2032948-2033007 [+]
UCSC
|
|---|
| Seed |
GUAACAG |
|---|
Precursor
(pre-Mir +30nt flank) |
CCCCGGACAUUCCUCCCUUGGCUGUUUGGGAAGAUGAGCUGUUCUGCUACAGCUGCUUGUCGGACUAGCGUAACAGGACGCUCGUCUGCCCAAACAUCUGGCCACUCAUCUCCAUCUAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCCCGGACAUUCCUCCC--|UG C A U C A GCUUG
U G UGUUUGGG AGAUGAGC GUUCUG UAC GCU U
G C ACAAACCC UCUGCUCG CAGGAC AUG CGA C
CAAUCUACCUCUACUCACC^GU U G - A - UCAGG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Bfl-Mir-4891_5p* |
| mirBase accession | MIMAT0020480 |
|---|
| Sequence |
0- AAGAUGAGCUGUUCUGCUACAGCU -24
Get sequence
|
|---|
| Mature sequence |
Bfl-Mir-4891_3p |
| mirBase accession | MIMAT0020481 |
|---|
| Sequence |
38- CGUAACAGGACGCUCGUCUGCC -60
Get sequence
|
|---|
