| MirGeneDB ID | Bla-Mir-4887 |
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| Family name |
MIR-4887 (all species) |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bfl-Mir-4887
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Branchiostoma
|
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Genome context
(BraLan2) |
Sc0000027: 134411-134467 [+]
Ensembl
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| Seed |
UCUCGAU |
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Precursor
(pre-Mir +30nt flank) |
UUGACAUCCUGUAACCUCGUUGAUGACGUAUUCUCGAUUGUUCUGGUCCAUCUCUAUCUUUGUGCUGGACCAUUACAAACGCGAGCCCGUCAUCAUCGCCUUCCAACUGAACUUGAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGACAUCCUGUAACCU--| U UA U A UC UCUCUAU
CG UGAUGACG UUC CG UUGU UGGUCCA \
GC ACUACUGC GAG GC AACA ACCAGGU C
UAGUUCAAGUCAACCUUCC^ U CC C A UU CGUGUUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bla-Mir-4887_5p |
| mirBase accession | None |
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| Sequence |
0- UUCUCGAUUGUUCUGGUCCAUC -22
Get sequence
|
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| Star sequence |
Bla-Mir-4887_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- UGGACCAUUACAAACGCGAGCC -57
Get sequence
|
|---|
