| MirGeneDB ID | Cbr-Lsy-6 |
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| Family name |
LSY-6 (all species) |
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| Species |
Roundworm (Caenorhabditis briggsae) |
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| MiRBase ID |
cbr-lsy-6
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| Paralogues |
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| Orthologues |
Cel-Lsy-6
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| Node of Origin (locus) |
Caenorhabditis
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| Node of Origin (family) |
Caenorhabditis
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Genome context
(CB4) |
V: 10397389-10397454 [-]
Ensembl
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| Seed |
UUUGUAU |
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Precursor
(pre-Mir +30nt flank) |
CGUCCUAACUAUUGUCAUGAACCUUCCACAGAAUGCGUCCAGUAUCAAAAUCACAUCAAAGAGAAUACGGUGGAUUUUGUAUGAGACGCAUUCCGUGGCGGGAACAUUAAAGAUCGCCCAUCGGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CGUCCUAACUAUUGUCAUGAA---| U A CA U ACAUCAAAG
CCU CCAC GAAUGCGUC GUA CAAAAUC A
GGG GGUG CUUACGCAG UAU GUUUUAG G
AAGGCUACCCGCUAGAAAUUACAA^ C C AG - GUGGCAUAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
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| Ea |
Ma |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Yo |
Yo |
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| Star sequence |
Cbr-Lsy-6_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GAAUGCGUCCAGUAUCAAAAUC -22
Get sequence
|
|---|
| Mature sequence |
Cbr-Lsy-6_3p |
| mirBase accession | MIMAT0000767 |
|---|
| Sequence |
44- UUUUGUAUGAGACGCAUUCCGU -66
Get sequence
|
|---|
