| MirGeneDB ID | Cbr-Mir-253 |
|---|
| Family name |
MIR-253 (all species) |
|---|
| Species |
Roundworm (Caenorhabditis briggsae) |
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| MiRBase ID |
cbr-mir-253
|
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| Paralogues |
|
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| Orthologues |
Cel-Mir-253
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| Node of Origin (locus) |
Caenorhabditis
|
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| Node of Origin (family) |
Caenorhabditis
|
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Genome context
(CB4) |
V: 11596505-11596569 [-]
Ensembl
|
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| Seed |
UAGUAGG |
|---|
Precursor
(pre-Mir +30nt flank) |
UUAAUUAACAACAUUUUUCGAGUUUCAGUCCUUCUCACACACCUCACUAACACUAACUACAGAUUUCUAGAUGUUAGUAGGCGUUGUGGGAAGGGCGGAGAUGACGAAUACUUUGUGCAAUUGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUAAUUAACAACAUUUU- A- A -| A C CUAACUACA
UCG GUUUC GUCCUUCUCAC AC CCU ACUAACA \
AGC UAGAG CGGGAAGGGUG UG GGA UGAUUGU G
AAGUUAACGUGUUUCAUA AG G U^ C - AGAUCUUUA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
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| Ea |
Ma |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Yo |
Yo |
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| Star sequence |
Cbr-Mir-253_5p* |
| mirBase accession | MIMAT0001299 |
|---|
| Sequence |
0- CUUCUCACACACCUCACUAACA -22
Get sequence
|
|---|
| Mature sequence |
Cbr-Mir-253_3p |
| mirBase accession | None |
|---|
| Sequence |
43- UUAGUAGGCGUUGUGGGAAGGG -65
Get sequence
|
|---|
