Mir-544-P2

MirGeneDB ID

Cfa-Mir-544-P2

Family name

MIR-544 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

Paralogues

Cfa-Mir-544-P1

Orthologues

Bta-Mir-544 Cja-Mir-544 Dno-Mir-544 Eca-Mir-544 Ete-Mir-544 Hsa-Mir-544 Laf-Mir-544 Mml-Mir-544 Mmr-Mir-544 Mmu-Mir-544 Ocu-Mir-544 Pab-Mir-544 Rno-Mir-544

Node of Origin (locus)

C. familiaris

Node of Origin (family)

Eutheria

Genome context
(canFam3_add)

chr12: 49638411-49638468 [-] UCSC Ensembl

Seed

CUUGUUA

Precursor
(pre-Mir +30nt flank)

AGGCUUGAUGUCCCUAUGAAUCACUGGAGAUCUUGUUAAGAUGCAGAUUCUGGUUCAUGGCCUAGGAUUCUGCAUUUGUAACAAGCUCCCAGGUGAUGCCAAUGCUGCCAUCCACAGA

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Structure

        10          20         30         40        50        
AGGCUUGAUGUCCCUAUGA--    -|   A  U       -         U   GGUUCA 
                     AUCA CUGG GA CUUGUUA AGAUGCAGA UCU      \
                     UAGU GACC CU GAACAAU UUUACGUCU AGG      U
AGACACCUACCGUCGUAACCG    G^   -  C       G         U   AUCCGG 
      110       100        90         80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-544-P2_5p

mirBase accession

None

Sequence

0- UCUUGUUAAGAUGCAGAUUCU -21

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Co-mature sequence

Cfa-Mir-544-P2_3p

mirBase accession

None

Sequence

36- AUUCUGCAUUUGUAACAAGCUC -58

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