MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-1495

Family name MIR-1495 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 6: 607126-607179 [+] UCSC Ensembl
Seed GUGUAAU
Precursor
(pre-Mir +30nt flank)		 
AUCAUCGUAAAGCAUCAAUUCUACGCCGGCCGCUCCAUAUAUGUCACACAUUCUGUUUUGAAGUGUAAUGUCUAUGGAAGCAGUGGGCGUCAGAAUAAUAUCAACUAUUUAAGA
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Structure
        10         20         30         40        50      
AUCAUCGUAAAGCAUCA-     -     G  C  -|     U    C    A   UG 
                  AUUCU ACGCC GC GC UCCAUA AUGU ACAC UUC  U
                  UAAGA UGCGG UG CG AGGUAU UGUA UGUG AAG  U
AGAAUUUAUCAACUAUAA     C     G  A  A^     C    A    -   UU 
  110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-1495_5p*
mirBase accessionNone
Sequence 
0- CGCUCCAUAUAUGUCACACAUUC -23
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Mature sequence

Cin-Mir-1495_3p
mirBase accessionNone
Sequence 
31- AGUGUAAUGUCUAUGGAAGCAGU -54
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