MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4043

Family name MIR-4043 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4043
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 14: 1118678-1118734 [-] UCSC Ensembl
Seed UGCAUAG
Precursor
(pre-Mir +30nt flank)		 
UGAGUUUUGCGUACAUUUUUCGGCGGUUGUCGUUCAGUCAUUCUAUGCAUACGUGCUAUACCGGUUUGCAUAGAUUGUCCGAACAUUAACAGCCGAAGGCCAUCUUCAAACGCAAGA
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Structure
        10          20        30        40        50        
UGAGUUUUGCGUACAUU--|      G    UC    AGU  U        U  GUGCU 
                   UUUCGGC GUUG  GUUC   CA UCUAUGCA AC     \
                   GAAGCCG CAAU  CAAG   GU AGAUACGU UG     A
AGAACGCAAACUUCUACCG^      A    UA    CCU  U        U  GCCAU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-4043_5p*
mirBase accessionMIMAT0016575
Sequence 
0- CGUUCAGUCAUUCUAUGCAUAC -22
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Mature sequence

Cin-Mir-4043_3p
mirBase accessionMIMAT0016576
Sequence 
35- UUGCAUAGAUUGUCCGAACAUU -57
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