MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4050

Family name MIR-4050 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4050
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 5: 3019437-3019494 [-] UCSC Ensembl
Seed AGGUAAA
Precursor
(pre-Mir +30nt flank)		 
AUCUAAGAAUUUGUAAUAGUGGUUUGGCAUUAGGUAAAUCAAAUUUCAGGCUGUUAGUGAGACCAACAGCUUGAAUUUGUUGCCUACAGACACUCCACUGCUAUCUACUGAGGUUUCA
Get precursor sequence
Structure
        10          20        30        40        50          
AUCUAAGAAUUUGUAAU--|    UU  GCAU       AU      U         AGUG 
                   AGUGG  UG    UAGGUAA  CAAAUU CAGGCUGUU    \
                   UCACC  AC    AUCCGUU  GUUUAA GUUCGACAA    A
ACUUUGGAGUCAUCUAUCG^    UC  AGAC       --      -         CCAG 
      110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4050_5p
mirBase accessionMIMAT0016589
Sequence 
0- UAGGUAAAUCAAAUUUCAGGCUGUU -25
Get sequence
Star sequence

Cin-Mir-4050_3p*
mirBase accessionMIMAT0016590
Sequence 
36- CAGCUUGAAUUUGUUGCCUACA -58
Get sequence