| MirGeneDB ID | Cin-Mir-4071 |
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| Family name |
MIR-4071 (all species) |
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| Species |
Sea Squirt (Ciona intestinalis) |
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| MiRBase ID |
cin-mir-4071
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. intestinalis
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| Node of Origin (family) |
C. intestinalis
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Genome context
(ci3) |
9: 4379240-4379291 [-]
UCSC
Ensembl
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| Seed |
UUGCUCU |
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Precursor
(pre-Mir +30nt flank) |
AUACAUAAAGUUAUUAUAGAGAUAGUGGUUCUUGCUCUUACUGUGACAUCCCUUGCCAAGGGAUAUCCAGACAGGGCAAAAACUGCUCUGCUCUUUUUUCAUCUGAAGCUUA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUACAUAAAGUUAUUAU- AU-| UG C UA U C UG
AGAG AG GUU UUGCUCU CUG GA AUCCCU \
UCUC UC CAA AACGGGA GAC CU UAGGGA C
AUUCGAAGUCUACUUUUU GUC^ GU A CA - A AC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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| Mature sequence |
Cin-Mir-4071_5p |
| mirBase accession | MIMAT0016630 |
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| Sequence |
0- CUUGCUCUUACUGUGACAUCCCU -23
Get sequence
|
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| Star sequence |
Cin-Mir-4071_3p* |
| mirBase accession | MIMAT0016631 |
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| Sequence |
30- GGAUAUCCAGACAGGGCAAAAA -52
Get sequence
|
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