| MirGeneDB ID | Cin-Mir-4093 |
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| Family name |
MIR-4093 (all species) |
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| Species |
Sea Squirt (Ciona intestinalis) |
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| MiRBase ID |
cin-mir-4093
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. intestinalis
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| Node of Origin (family) |
C. intestinalis
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Genome context
(ci3) |
1: 3128495-3128562 [+]
UCSC
Ensembl
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| Seed |
UGCAACA |
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Precursor
(pre-Mir +30nt flank) |
UAUAUACCGGUACACGCUGGGUGUCAGCAUCUCCGCAGCUUUUGCUGCAUUAGUUGCCCAUAAAGGGCGGAUACGUGAUGCAACAAAACUGCGGUUAUGUUGGACUACAGGUAUUCAACGAAAUUCCG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UAUAUACCGGUACACGCUG---| G CU C C GUUGCCCAUAA
GGU UCAGCAU CCGCAG UUUUG UGCAUUA \
UCA GGUUGUA GGCGUC AAAAC ACGUAGU A
GCCUUAAAGCAACUUAUGGACA^ - UU - A GCAUAGGCGGG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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| Star sequence |
Cin-Mir-4093_5p* |
| mirBase accession | MIMAT0016672 |
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| Sequence |
0- CUCCGCAGCUUUUGCUGCAUUA -22
Get sequence
|
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| Mature sequence |
Cin-Mir-4093_3p |
| mirBase accession | MIMAT0016673 |
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| Sequence |
47- AUGCAACAAAACUGCGGUUAU -68
Get sequence
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