MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-3140

Family name MIR-3140 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Hsa-Mir-3140  Mml-Mir-3140  Mmr-Mir-3140  Pab-Mir-3140 
Node of Origin (locus) Primates
Node of Origin (family) Primates
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021917.1: 40275757-40275825 [+] UCSC Ensembl
Seed GCUUUUG
Precursor
(pre-Mir +30nt flank)		 
GGAAGUCUACCAUUCAUGUCCUUUUGAGGUACCUGAAUUACCAAAACCUUUAUGUGUUCUGAAGUUAUUGAAAAUAAUAGCUUUUGGGAACUCAGGUAGUUCAGGAGCGACCUUUCUAAAAAACAGAUG
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Structure
        10         20         30        40        50        60    
GGAAGUCUACCAUUCAU-   -|       G       A  A      C  UUAUGUGUUCUGAA 
                  GUC CUUUUGAG UACCUGA UU CCAAAA CU              \
                  CAG GAGGACUU AUGGACU AA GGUUUU GA              G
GUAGACAAAAAAUCUUUC   C^       G       C  G      C  UAAUAAAAGUUAUU 
       120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
- +
To
Star sequence

Cja-Mir-3140_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACCUGAAUUACCAAAACCUUU -21
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Mature sequence

Cja-Mir-3140_3p (predicted)
mirBase accessionNone
Sequence 
48- AGCUUUUGGGAACUCAGGUAG -69
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