| MirGeneDB ID | Cmi-Novel-17 |
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| Family name |
CMI-NOVEL-17 (all species) |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. milii
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| Node of Origin (family) |
C. milii
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635875.1: 3171072-3171130 [+]
UCSC
Ensembl
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| Seed |
GAGUGAC |
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Precursor
(pre-Mir +30nt flank) |
GCCCCGAAUACCUUUUACCUCCUGGCUGCACCUCUCUUCCCGUCACUCUCCGUUAUGAGGCAGCGCAGCGAGUGACAGGAAGAGAGGCAGAGCUGGAGGUAUGAUUCAUUCCUCCGCUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GCCCCGAAUACCUUUUA---| U GCA C UCCGUUAUGA
CCUCC GGCU CCUCUCUUCC GUCACUC \
GGAGG UCGA GGAGAGAAGG CAGUGAG G
CUCGCCUCCUUACUUAGUAU^ - GAC A CGACGCGACG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Yes
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| Motifs | No |
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Tissue expression
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| Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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| Star sequence |
Cmi-Novel-17_5p* |
| mirBase accession | None |
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| Sequence |
0- CCUCUCUUCCCGUCACUCUCC -21
Get sequence
|
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| Mature sequence |
Cmi-Novel-17_3p |
| mirBase accession | None |
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| Sequence |
38- CGAGUGACAGGAAGAGAGGCA -59
Get sequence
|
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