| MirGeneDB ID | Cmi-Novel-20 |
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| Family name |
CMI-NOVEL-20 (all species) |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. milii
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| Node of Origin (family) |
C. milii
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635858.1: 12019529-12019591 [-]
UCSC
Ensembl
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| Seed |
UGUGGUG |
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Precursor
(pre-Mir +30nt flank) |
GUAGUUCGUCAUUGCGGCUGAUAAGUGGGCAUGUGGUGACGGUCAAGACUGCAUUUCUCGCUAUUCAUUGCAUCUUGACCCAUCACUGCAAGCGUACUUACCGGCAAGCAUUAGAAUCGCAUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GUAGUUCGUCAUUGCGG-- A G A UG C-| C UUUCUCG
CUG UAAGUG GC UG GUGA GGUCAAGA UGCA \
GGC AUUCAU CG AC CACU CCAGUUCU ACGU C
UUACGCUAAGAUUACGAAC C G A GU AC^ - UACUUAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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| Mature sequence |
Cmi-Novel-20_5p |
| mirBase accession | None |
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| Sequence |
0- AUGUGGUGACGGUCAAGACUGCA -23
Get sequence
|
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| Co-mature sequence |
Cmi-Novel-20_3p |
| mirBase accession | None |
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| Sequence |
40- CAUCUUGACCCAUCACUGCAAGC -63
Get sequence
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