| MirGeneDB ID | Cpi-Mir-9587 |
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| Family name |
MIR-9587 (all species) |
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| Species |
Western painted turtle (Chrysemys picta bellii) |
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| MiRBase ID |
cpi-mir-9587
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. picta
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| Node of Origin (family) |
C. picta
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Genome context
(chrPic1) |
JH584446: 954091-954147 [+]
UCSC
Ensembl
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| Seed |
AGCAAAG |
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Precursor
(pre-Mir +30nt flank) |
GCGAAGCGUGUGCAUCCGGCCAUCCCUCUUCAGCAAAGCACCGAAGCACACGCAUCACCUAAAGCGCAUGCGUCGGUGCUGCUCAGAAGAGUGGCGGACUGCUGCUCCAGACCUGGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GCGAAGCGUGUGCAUCCG----| UCC -- AA A CA CAUCA
GCCA CUCUUC AGCA GCACCGA GCA CG C
CGGU GAGAAG UCGU CGUGGCU CGU GC C
CGGUCCAGACCUCGUCGUCAGG^ --- AC -- G AC GAAAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Cpi-Mir-9587_5p |
| mirBase accession | MIMAT0037970 |
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| Sequence |
0- CAGCAAAGCACCGAAGCACACG -22
Get sequence
|
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| Co-mature sequence |
Cpi-Mir-9587_3p |
| mirBase accession | MIMAT0037971 |
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| Sequence |
35- GCAUGCGUCGGUGCUGCUCAGA -57
Get sequence
|
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