| MirGeneDB ID | Cpi-Mir-9597 |
|---|
| Family name |
MIR-9597 (all species) |
|---|
| Species |
Western painted turtle (Chrysemys picta bellii) |
|---|
| MiRBase ID |
cpi-mir-9597
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. picta
|
|---|
| Node of Origin (family) |
C. picta
|
|---|
Genome context
(chrPic1) |
JH584680: 5293575-5293634 [+]
UCSC
Ensembl
|
|---|
| Seed |
AAAUAUC |
|---|
Precursor
(pre-Mir +30nt flank) |
CCCUGUAAUGGAUGUCAGGCACUUGGGCCCAGAUCCUAAGACGUAUUUAGAUGCUUAACAUUAGAUACCUAAAUAUCUUUCAGGAUCUGGGCCCUGAUGAAUAUUCCAACAGUAUACCAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCCUGUAAUGGAUGUCAGG--| CUU A C AUGCUUAA
CA GGGCCCAGAUCCU AGA GUAUUUAG C
GU CCCGGGUCUAGGA UUU UAUAAAUC A
GACCAUAUGACAACCUUAUAA^ AGU C C CAUAGAUU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Cpi-Mir-9597_5p* |
| mirBase accession | MIMAT0037990 |
|---|
| Sequence |
0- AGAUCCUAAGACGUAUUUAG -20
Get sequence
|
|---|
| Mature sequence |
Cpi-Mir-9597_3p |
| mirBase accession | MIMAT0037991 |
|---|
| Sequence |
39- UAAAUAUCUUUCAGGAUCUGG -60
Get sequence
|
|---|
