| MirGeneDB ID | Cpo-Mir-12078 |
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| Family name |
MIR-12078 (all species) |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-12078
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. porcellus
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| Node of Origin (family) |
C. porcellus
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Genome context
(cavPor3) |
scaffold_41: 4308585-4308650 [+]
UCSC
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| Seed |
GGUGGAA |
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Precursor
(pre-Mir +30nt flank) |
UGACUAGCUCCUUAUCAUGCCAUUCAGUAUAGGUGGAACUCUUGAUAGUCUGCUCACUUUCACUAUAGCUCAGACUAUCAGAGUCUCCAUUCCUGUAAUGUUUGGUGCUAUUCCACUGUCUGUGGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UGACUAGCUCCUUAUCAU-- UU G -- -| U GCUCACUUU
GCCA CA UAUAGG UGGA ACUCU GAUAGUCU C
UGGU GU AUGUCC ACCU UGAGA CUAUCAGA A
CGGUGUCUGUCACCUUAUCG UU A UU C^ - CUCGAUAUC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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| Mature sequence |
Cpo-Mir-12078_5p |
| mirBase accession | MIMAT0047457 |
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| Sequence |
0- AGGUGGAACUCUUGAUAGUCU -21
Get sequence
|
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| Star sequence |
Cpo-Mir-12078_3p* |
| mirBase accession | MIMAT0047458 |
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| Sequence |
43- ACUAUCAGAGUCUCCAUUCCUGU -66
Get sequence
|
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