| MirGeneDB ID | Cpo-Mir-12080 |
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| Family name |
MIR-12080 (all species) |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-12080
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. porcellus
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| Node of Origin (family) |
C. porcellus
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Genome context
(cavPor3) |
scaffold_1: 22962766-22962822 [+]
UCSC
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| Seed |
CGCUCUU |
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Precursor
(pre-Mir +30nt flank) |
GCCAUCUGCAGUAACCUCUCAGUCACAGCCUCGCUCUUUUCAGGACCUUUGCUGUUCUGAGGAGCAAACGUCCUGAAAAGAGUGAGGCUGUGACUGAGAGGGAUGGGGCCGCUCCAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GCCAUCUGCAGUAACCU--| C UGUUC
CUCAGUCACAGCCUCGCUCUUUUCAGGAC UUUGC \
GAGUCAGUGUCGGAGUGAGAAAAGUCCUG AAACG U
GACCUCGCCGGGGUAGGGA^ C AGGAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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| Mature sequence |
Cpo-Mir-12080_5p |
| mirBase accession | MIMAT0047463 |
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| Sequence |
0- UCGCUCUUUUCAGGACCUUUGC -22
Get sequence
|
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| Co-mature sequence |
Cpo-Mir-12080_3p |
| mirBase accession | MIMAT0047464 |
|---|
| Sequence |
35- AAACGUCCUGAAAAGAGUGAGG -57
Get sequence
|
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