| MirGeneDB ID | Cpo-Mir-872 |
|---|
| Family name |
MIR-872 (all species) |
|---|
| Species |
Guinea pig (Cavia porcellus) |
|---|
| MiRBase ID |
cpo-mir-872
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Eca-Mir-872
Mmr-Mir-872
Mmu-Mir-872
Ocu-Mir-872
Rno-Mir-872
|
|---|
| Node of Origin (locus) |
Boreoeutheria
|
|---|
| Node of Origin (family) |
Boreoeutheria
|
|---|
Genome context
(cavPor3) |
scaffold_2: 5601257-5601317 [+]
UCSC
|
|---|
| Seed |
GAACUAU |
|---|
Precursor
(pre-Mir +30nt flank) |
AGGGGUUUUUACCAGAAGGUUACUUGUUAGAAGGUUACUUGUUAGUUCAGGACCUCAUUCUUUCCUGCCUGAACUAUUGUAGUAGCCUCCUAACUGGUCACCCCACCUCCAGUCUUGCCCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGGGGUUUUUACCAGAA-- U U A UGU-| ACCUCAU
GGU ACU GUUAG AGGUUACU UAGUUCAGG U
CCA UGG CAAUC UCCGAUGA AUCAAGUCC C
CCCCGUUCUGACCUCCACC C U C UGUU^ GUCCUUU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Cpo-Mir-872_5p* |
| mirBase accession | MIMAT0047389 |
|---|
| Sequence |
0- AAGGUUACUUGUUAGUUCAGG -21
Get sequence
|
|---|
| Mature sequence |
Cpo-Mir-872_3p |
| mirBase accession | MIMAT0047390 |
|---|
| Sequence |
39- UGAACUAUUGUAGUAGCCUCCU -61
Get sequence
|
|---|
