| MirGeneDB ID | Cte-Mir-2689 |
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| Family name |
MIR-2689 (all species) |
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| Species |
Polychaete worm (Capitella teleta) |
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| MiRBase ID |
cte-mir-2689
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| Paralogues |
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| Orthologues |
Efe-Mir-2689-P1
Efe-Mir-2689-P2
Pdu-Mir-2689
Snu-Mir-2689
|
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| Node of Origin (locus) |
Sipuncula + Pleistoannelida
|
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| Node of Origin (family) |
Sipuncula + Pleistoannelida
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Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_339: 64468-64526 [-]
Ensembl
|
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| Seed |
AUCCUGG |
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Precursor
(pre-Mir +30nt flank) |
AAACGCUACUUGAAUUGUCGUUUCCGAAUCAGGCCUCGCUGGCCAGGAUUCGGGCUUAUUUCCUCGUAUCCUGGCCUGCAAGUGCACUCAUUCGGACGACCUUAUCUCCAUGGCAACAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AAACGCUACUUGAAUUG---| UU C - - C U U GGCUU
UCG UCCGAAU AG GC CU GC GGCCAGGAU CG A
AGC AGGCUUA UC CG GA CG CCGGUCCUA GC U
GACAACGGUACCUCUAUUCC^ -- C A U A U U UCCUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Cte-Mir-2689_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AGGCCUCGCUGGCCAGGAUUCG -22
Get sequence
|
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| Mature sequence |
Cte-Mir-2689_3p |
| mirBase accession | MIMAT0013542 |
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| Sequence |
36- UAUCCUGGCCUGCAAGUGCACUC -59
Get sequence
|
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