| MirGeneDB ID | Cte-Mir-2693 |
|---|
| Family name |
MIR-2693 (all species) |
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| Species |
Polychaete worm (Capitella teleta) |
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| MiRBase ID |
cte-mir-2693
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| Paralogues |
|
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| Orthologues |
Efe-Mir-2693-P1
Efe-Mir-2693-P2
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| Node of Origin (locus) |
Sedentaria
|
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| Node of Origin (family) |
Sedentaria
|
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Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_18: 712332-712390 [+]
Ensembl
|
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| Seed |
GAAAUUG |
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Precursor
(pre-Mir +30nt flank) |
UUCACCCUGACGACAUCGCUCGUGGGUCUCAGAAAUUGUAUACUAGACUAGUUCGAAGUCUAUUUGCUAGUCUAGUGUACAGUUCAUGGGAUCUCAGAGCACUGACUUCUCCGAAAUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUCACCCUGACGACAUC--| GU GA UCGAAG
GCUC GGGUCUCA AAUUGUAUACUAGACUAGU \
CGAG UCUAGGGU UUGACAUGUGAUCUGAUCG U
GGUAAAGCCUCUUCAGUCA^ AC AC UUUAUC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Cte-Mir-2693_5p |
| mirBase accession | None |
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| Sequence |
0- AGAAAUUGUAUACUAGACUAGU -22
Get sequence
|
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| Star sequence |
Cte-Mir-2693_3p* |
| mirBase accession | MIMAT0013550 |
|---|
| Sequence |
37- UAGUCUAGUGUACAGUUCAUGG -59
Get sequence
|
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