| MirGeneDB ID | Cte-Novel-4 |
|---|
| Family name |
CTE-NOVEL-4 (all species) |
|---|
| Species |
Polychaete worm (Capitella teleta) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. teleta
|
|---|
| Node of Origin (family) |
C. teleta
|
|---|
Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_35: 182586-182644 [+]
Ensembl
|
|---|
| Seed |
CUACCUG |
|---|
Precursor
(pre-Mir +30nt flank) |
GUAGAUGAGGCAGGGAUAUGAUUUAAGGAUGUAGAUUUUCUCAGGUAGACCGUGUAGACGGUAGACGGUCUACCUGAGAAUAUCCACAUUAUAAUCAUUAUGGAGCGUAUAUCAAACAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUAGAUGAGGCAGGGAU----| UAAG A U GUGUAGA
AUGAUU GAUGU GAU UUCUCAGGUAGACC \
UACUAA UUACA CUA AAGAGUCCAUCUGG C
GACAAACUAUAUGCGAGGUAU^ UA-- C U CAGAUGG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Cte-Novel-4_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GUAGAUUUUCUCAGGUAGACC -21
Get sequence
|
|---|
| Mature sequence |
Cte-Novel-4_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UCUACCUGAGAAUAUCCACAU -59
Get sequence
|
|---|
