| MirGeneDB ID | Dan-Mir-971 |
| Family name |
MIR-971 (all species) |
| Species |
Fruit fly (Drosophila ananassae) |
| MiRBase ID |
|
| Paralogues |
|
| Orthologues |
Aae-Mir-971
Aga-Mir-971
Bge-Mir-971-v1
Dlo-Mir-971
Dme-Mir-971
Dmo-Mir-971
Dsi-Mir-971
Dya-Mir-971
Gpa-Mir-971
Hme-Mir-971
Tca-Mir-971
|
| Node of Origin (locus) |
Neoptera
|
| Node of Origin (family) |
Neoptera
|
Genome context (Dana_caf1) |
scaffold_13117: 3891818-3891881 [+]
Ensembl
|
| Seed |
UGGUGUU |
Precursor (pre-Mir +30nt flank) |
UGUGAGAAAAUUCCGUGGCUGGCAUCGUUCACUGUAAAUUGUAACCAUCAAAGCGUUUUUUAUCAGAGCCGCUUGGUGUUACUUCUUACAGUGAGUGAGCCAGCUGGAGCACAUAUUAAAAAAA
Get precursor sequence
|
| Structure | 10 20 30 40 50 60
UGUGAGAAAAUUCCGUG---| A AUU C A GUUUUUU
GCUGGC UCGUUCACUGUAA GUAAC AUCAA GC A
CGACCG AGUGAGUGACAUU CAUUG UGGUU CG U
AAAAAAAUUAUACACGAGGU^ - CUU - - CCGAGAC
120 110 100 90 80 70 |
| Deep sequencing |
Go to detailed chart
|
| 3' NTU |
No
|
| Motifs | No |
Tissue expression
|
|
| Star sequence |
Dan-Mir-971_5p* |
| mirBase accession | None |
| Sequence |
0- ACUGUAAAUUGUAACCAUCAAAGC -24
Get sequence
|
| Mature sequence |
Dan-Mir-971_3p |
| mirBase accession | None |
| Sequence |
42- UUGGUGUUACUUCUUACAGUGA -64
Get sequence
|