| MirGeneDB ID | Dpu-Mir-12605 |
|---|
| Family name |
MIR-12605 (all species) |
|---|
| Species |
Common water flea (Daphnia pulex) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Dma-Mir-12605
|
|---|
| Node of Origin (locus) |
Branchiopoda
|
|---|
| Node of Origin (family) |
Branchiopoda
|
|---|
Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_13: 1740035-1740097 [+]
Ensembl
|
|---|
| Seed |
UGCACUG |
|---|
Precursor
(pre-Mir +30nt flank) |
AAGAUUUAAAAAGAUCGAACGACGACACUGACUUCGAGCCGACCAGUUGCUUUGUGGCAUCAAGACUUCAUUGCACUGUACGGUUCGAGGCGAAUGUCUCGUUGAAUAAACUACGAAUUUAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAGAUUUAAAAAGAUCG---| C C- A AC U UU UGGCAU
AACGA GACA UG CUUCGAGCCG CAGU GC UG C
UUGCU CUGU GC GGAGCUUGGC GUCA CG AC A
UAAUUUAAGCAUCAAAUAAG^ - AA - AU - UU UUCAGA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Dpu-Mir-12605_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACUUCGAGCCGACCAGUUGCUUUG -24
Get sequence
|
|---|
| Mature sequence |
Dpu-Mir-12605_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UUGCACUGUACGGUUCGAGGCGA -63
Get sequence
|
|---|
