| MirGeneDB ID | Dre-Mir-148-P2 |
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| Family name |
MIR-148 (all species) |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
dre-mir-148
|
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| Paralogues |
Dre-Mir-148-P3
|
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| Orthologues |
Cmi-Mir-148-P2
Ebu-Mir-148
Gmo-Mir-148-P2
Loc-Mir-148-P2
Mal-Mir-148-P2
Pma-Mir-148-o2
Tni-Mir-148-P2
|
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(danRer11) |
chr9: 1644693-1644750 [-]
UCSC
Ensembl
|
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| Seed |
CAGUGCA |
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Precursor
(pre-Mir +30nt flank) |
UCAUCAAGCAGCUCUCUGGCUUUCCAAGUAAAGUUCUGUGAUACACUCCGACUCUGAAUGUUUGCAGUCAGUGCAUUACAGAACUUUGUUUUGGGAGUUUAAAGCUCAGGCCUGGAGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCAUCAAGCAGCUCUCU--| UU C A CC CUGAA
GGCU C AAGUAAAGUUCUGUGAU CACU GACU U
UUGA G UUUGUUUCAAGACAUUA GUGA CUGA G
GGAGGUCCGGACUCGAAAU^ GG U C -- CGUUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Although this appears to be a Group 2 miRNA by far the highest read group is monoadenylated at the 3' end of the 3p arm. |
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| 3' NTU |
Yes
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Star sequence |
Dre-Mir-148-P2_5p* |
| mirBase accession | None |
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| Sequence |
0- AAGUUCUGUGAUACACUCCGACU -23
Get sequence
|
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| Mature sequence |
Dre-Mir-148-P2_3p |
| mirBase accession | MIMAT0001845 |
|---|
| Sequence |
37- UCAGUGCAUUACAGAACUUUG -58
Get sequence
|
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| Proposed targets |
TargetScanFish: dre-miR-148
|
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