| MirGeneDB ID | Efe-Mir-2-o20 |
|---|
| Family name |
MIR-2 (all species) |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
Efe-Mir-2-o21
Efe-Mir-2-o22
Efe-Mir-2-o23
Efe-Mir-2-o24
Efe-Mir-2-P12f
Efe-Mir-2-P12g
|
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| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(Efe_combined) |
Efet.01.128711: 2118-2173 [+]
|
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| Seed |
AUCACAG |
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Precursor
(pre-Mir +30nt flank) |
GCUAGGACAAAUGUGGCCAACAUGUGUAGGUGUCCAAAUUGACUGGGAUGCGUUUUUCUGUUCAUAUCACAGCCAAUUUGGUCAUCUAGCUGUUUGCUCAUCAGCUUGAAGCCGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCUAGGACAAAUGUGGCC----| U G U A G CGUUUU
AACA GU UAGGUG CCAAAUUG CUG GAUG U
UUGU CG AUCUAC GGUUUAAC GAC CUAU C
AAGCCGAAGUUCGACUACUCGU^ - - U C A ACUUGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Efe-Mir-2-o20_5p* |
| mirBase accession | None |
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| Sequence |
0- UGUCCAAAUUGACUGGGAUGCG -22
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-2-o20_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UAUCACAGCCAAUUUGGUCAUC -56
Get sequence
|
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