| MirGeneDB ID | Efe-Mir-2690-P2 |
|---|
| Family name |
MIR-2690 (all species) |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
Efe-Mir-2690-P1
Efe-Mir-2690-P3
Efe-Mir-2690-P4
|
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| Orthologues |
Cte-Mir-2690
|
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
Sedentaria
|
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Genome context
(Efe_combined) |
Efet.01.54429: 6414-6475 [-]
|
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| Seed |
GUGAAAG |
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Precursor
(pre-Mir +30nt flank) |
NNNNNNNNGAAGAGGAAGGAGAUACGGGACAACUCUGGACCCGCUCUCAUACAAUGUGCUUUUUAACUGUGUGAAAGUGAGGCCAGUGUGGUCUACUGUCUCUCUCGAACAACCGAACGACG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
NNNNNNNNGAAGAGGAA--| CG A U A - C AAUGUGC
GGAGAUA GGAC AC CUGG CC CGCU UCAUAC U
UCUCUGU UCUG UG GACC GG GUGA AGUGUG U
GCAGCAAGCCAACAAGCUC^ CA G U - A A UCAAUUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Efe-Mir-2690-P2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AACUCUGGACCCGCUCUCAUAC -22
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-2690-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGUGAAAGUGAGGCCAGUGUGGU -62
Get sequence
|
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