| MirGeneDB ID | Egr-Mir-2-o138 |
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| Family name |
MIR-2 (all species) |
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| Species |
Hydatid worm (Echinococcus granulosus) |
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| MiRBase ID |
egr-mir-2a
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| Paralogues |
Egr-Mir-2-o136
Egr-Mir-2-o137
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| Orthologues |
Gsp-Mir-2
Ple-Mir-2
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| Node of Origin (locus) |
E. granulosus
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| Node of Origin (family) |
Protostomia
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Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus) |
APAU02000019.1: 574332-574389 [+]
UCSC
Ensembl
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| Seed |
AUCACAG |
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Precursor
(pre-Mir +30nt flank) |
AACUUCGUGAGCACGCUUCGAACCUCCCUACGUUCCAGGGGGAUGUGAGUUUAUACAGCCUAUGAAUCACAGCCCUGCUUGGAACCAAAGGAGCUUCCUAAACGCCUUUGGCUUAUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AACUUCGUGAGCACGCUUC-- C CUAC --| A G UACA
GAA CUCC GUUCCAGG GGG UGUGA UUUA \
CUU GAGG CAAGGUUC CCC ACACU AAGU G
UUUAUUCGGUUUCCGCAAAUC C AAAC GU^ G - AUCC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Eg |
Eg |
Ev |
Ev |
Ad |
Fe |
Fe |
Hy |
Hy |
Hy |
Li |
Li |
Li |
Mi |
Mi |
Mi |
Po |
Po |
Po |
Po |
Po |
Po |
Po |
Pr |
Pr |
Pr |
Sm |
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| Star sequence |
Egr-Mir-2-o138_5p* |
| mirBase accession | MIMAT0037419 |
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| Sequence |
0- CGUUCCAGGGGGAUGUGAGUUUA -23
Get sequence
|
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| Mature sequence |
Egr-Mir-2-o138_3p |
| mirBase accession | MIMAT0020229 |
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| Sequence |
34- AAUCACAGCCCUGCUUGGAACCAA -58
Get sequence
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