Mir-36-o36

MirGeneDB ID

Egr-Mir-36-o36

Family name

MIR-36 (all species)

Species

Hydatid worm (Echinococcus granulosus)

MiRBase ID

egr-mir-36a

Paralogues

Egr-Mir-36-o37

Orthologues

Agr-Mir-36 Bge-Mir-36 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Ofu-Mir-36 Pau-Mir-36 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Snu-Mir-36 Tca-Mir-36 Tur-Mir-36-P36 War-Mir-36

Node of Origin (locus)

E. granulosus

Node of Origin (family)

Protostomia

Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)

APAU02000028.1: 704590-704664 [+] UCSC Ensembl

Seed

CACCGGG

Precursor
(pre-Mir +30nt flank)

UUCCUUCAAAUCCAGUCCAGCUCAGUCUGUACGGAUUGUCCGUCCGGUAACCGCGAUAAGGUGAAGGCCUUUUUAACUGCUGGUCACCGGGUAGACAUUCCUUGCUGACUGGCUCUGAUCAGCACUUUCCAUUUA

Get precursor sequence

Structure

        10           20        30        40        50        60       
UUCCUUCAAAUCCAGUCC---|  U     U   C   U    CG      A   GCGAUAAGGUGAAG 
                     AGC CAGUC GUA GGA UGUC  UCCGGU ACC              \
                     UCG GUCAG CGU CCU ACAG  GGGCCA UGG              G
AUUUACCUUUCACGACUAGUC^  -     U   U   U    AU      C   UCGUCAAUUUUUCC 
   130       120        110       100        90        80        70