| MirGeneDB ID | Egr-Mir-92-o135 |
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| Family name |
MIR-92 (all species) |
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| Species |
Hydatid worm (Echinococcus granulosus) |
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| MiRBase ID |
egr-mir-3479b
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| Paralogues |
Egr-Mir-92-o134
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
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| Node of Origin (locus) |
E. granulosus
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| Node of Origin (family) |
Bilateria
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Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus) |
APAU02000015.1: 733486-733553 [-]
UCSC
Ensembl
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| Seed |
AUUGCAC |
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Precursor
(pre-Mir +30nt flank) |
ACUUUUUCCUUCGAUUUACGGUCGCUGUGGUGGCGGUGCGCGGCGCAAUUUCUGUUAACCCGCUCUCUUGGGUGCAGAUUGCACUACCCAUCGCCCACACAACAUCCGCAAAACAUCUGAGAUUCAUG
Get precursor sequence
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| Structure | 10 20 30 40 50 60
ACUUUUUCCUUCGAUUUA--| UCGC GU CGC C UU UUAACCCGC
CGG UGUG GGCGGUG GG GCAA UCUG U
GCC ACAC CCGCUAC UC CGUU AGAC C
GUACUUAGAGUCUACAAAAC^ UACA AC CCA A -- GUGGGUUCU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Eg |
Eg |
Ev |
Ev |
Ad |
Fe |
Fe |
Hy |
Hy |
Hy |
Li |
Li |
Li |
Mi |
Mi |
Mi |
Po |
Po |
Po |
Po |
Po |
Po |
Po |
Pr |
Pr |
Pr |
Sm |
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| Star sequence |
Egr-Mir-92-o135_5p* |
| mirBase accession | MIMAT0041730 |
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| Sequence |
0- UGGCGGUGCGCGGCGCAAUUUCUG -24
Get sequence
|
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| Mature sequence |
Egr-Mir-92-o135_3p |
| mirBase accession | MIMAT0041731 |
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| Sequence |
46- GAUUGCACUACCCAUCGCCCAC -68
Get sequence
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