| MirGeneDB ID | Esc-Mir-12530 |
|---|---|
| Family name | MIR-12530 (all species) |
| Species | Hawaiian bobtail squid (Euprymna scolopes) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Obi-Mir-12530 Ovu-Mir-12530 |
| Node of Origin (locus) | Coleoidea |
| Node of Origin (family) | Coleoidea |
| Genome context (esc-GCA_024364805.1_ASM2436480v1) |
CM044509.1: 56699373-56699444 [-] Ensembl |
| Seed | GAAGAGA |
| Precursor (pre-Mir +30nt flank) |
AACUGACAAGUAUCUGGGCUCCCUCAUAGGUGAAGAGACCGUGCAGGUCUGUGUGCUAGAAUGUUAACAACAACACUCACAGACACGCGCUGUCUACUCACUGAUGAGGUUGGCUAUAUCAGUGAAUUCAAUGet precursor sequence |
| Structure | 10 20 30 40 50 60 AACUGACAAGUAUCUGG- C-| A AG C AG GUGCUAGAAUGU GCU CCUCAU GGUGA AGAC GUGC GUCUGU U CGG GGAGUA UCACU UCUG CGCG CAGACA A UAACUUAAGUGACUAUAU UU^ G CA U CA CUCACAACAACA 130 120 110 100 90 80 70 |
| Deep sequencing | |
| Comment | There is a second Dicer cut -1 on the 3p arm. |
| 3' NTU | No |
| Motifs | UGUG in loop |
| Mature sequence | Esc-Mir-12530_5p |
| mirBase accession | None |
| Sequence |
0- UGAAGAGACCGUGCAGGUCUGU -22
Get sequence
|
| Star sequence | Esc-Mir-12530_3p* |
| mirBase accession | None |
| Sequence |
50- AGACACGCGCUGUCUACUCACU -72
Get sequence
|
