| MirGeneDB ID | Ete-Novel-5 |
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| Family name |
ETE-NOVEL-5 (all species) |
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| Species |
Lesser hedgehog tenrec (Echinops telfairi) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. telfairi
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| Node of Origin (family) |
E. telfairi
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Genome context
(echTel2) |
JH980369: 8721769-8721826 [+]
UCSC
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| Seed |
GCCACCG |
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Precursor
(pre-Mir +30nt flank) |
CACCACCCACGGUGCCGCAUGCCGGGGAGGCUGGGGAGGCUGGGGAGGCUGGCGUCACUCGAGUCCAGCCACCGUGGCCCUUCCAGCUUCCCUGGGUGCACAGUCAGCAUGUCCUGUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CACCACCCACGGUGCCG---| G GA G A CGUCA
CAU CCGGGGAGGCUGGG GGCUG GG GGCUGG C
GUG GGUCCCUUCGACCU CCGGU CC CCGACC U
GUGUCCUGUACGACUGACAC^ - UC G A UGAGC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Ete-Novel-5_5p* |
| mirBase accession | None |
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| Sequence |
0- CUGGGGAGGCUGGGGAGGCUGG -22
Get sequence
|
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| Mature sequence |
Ete-Novel-5_3p |
| mirBase accession | None |
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| Sequence |
36- AGCCACCGUGGCCCUUCCAGCU -58
Get sequence
|
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