| MirGeneDB ID | Gmo-Mir-7132-P1 |
|---|
| Family name |
MIR-7132 (all species) |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-7132b
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| Paralogues |
Gmo-Mir-7132-P2
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| Orthologues |
Dre-Mir-7132-P1
Mal-Mir-7132-P1
Tni-Mir-7132-P1
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Clupeocephala
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1698: 26933-26990 [-]
UCSC
Ensembl
|
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| Seed |
ACUUGGU |
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Precursor
(pre-Mir +30nt flank) |
AGUUUAGGCCCCAUAGUGUCUCUGCCCCUGGACUUGGUCGAAGCUCCUCAGGCUUACUUGAACCUCUGAGAUGUUUGGAACAAGUACAGGGUCUGGGGCAAUGUCGUGGUGGACUGGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGUUUAGGCCCCAUAGU--| UGC G G G UC CUUAC
GUCUC CCCUG ACUUG UC AAGC CUCAGG U
CGGGG GGGAC UGAAC AG UUUG GAGUCU U
UGGUCAGGUGGUGCUGUAA^ UCU A A G UA CCAAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Gmo-Mir-7132-P1_5p |
| mirBase accession | MIMAT0044139 |
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| Sequence |
0- GACUUGGUCGAAGCUCCUCAGG -22
Get sequence
|
|---|
| Co-mature sequence |
Gmo-Mir-7132-P1_3p |
| mirBase accession | MIMAT0044140 |
|---|
| Sequence |
36- UGAGAUGUUUGGAACAAGUACA -58
Get sequence
|
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