| MirGeneDB ID | Gpa-Mir-965 |
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| Family name |
MIR-965 (all species) |
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| Species |
Tsetse fly (Glossina pallidipes) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Aae-Mir-965
Aga-Mir-965
Bge-Mir-965
Dan-Mir-965
Dlo-Mir-965
Dma-Mir-965
Dme-Mir-965
Dmo-Mir-965
Dpu-Mir-965
Dsi-Mir-965
Dya-Mir-965
Hme-Mir-965
Tca-Mir-965
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| Node of Origin (locus) |
Pancrustacea
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| Node of Origin (family) |
Pancrustacea
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Genome context
(GpalI1) |
Scaffold373: 109288-109379 [-]
Ensembl
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| Seed |
AAGCGUA |
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Precursor
(pre-Mir +30nt flank) |
UGGUUUUUUUAGAAUCUGCAGCAAUUUUGAGGGGUGACGCUGUACGCUGUAUGUGUUGUUUUCAUAGAUUCUUUGGAAAGACAAAUUCUUUUAAUAAUCAUAAGCGUAUAGCUUUUCCCCUUAAAUAUUGAUGCACCAACAACUACACAGCG
Get precursor sequence
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| Structure | 10 20 30 40 50 60 70
UGGUUUUUUUAGAAUCU- G -| U C G UGUUGUUUUCAUAGAUUCUUUG
GCA CAAU UUUGAGGGG GA GCUGUACGCU UAUG \
CGU GUUA AAAUUCCCC UU CGAUAUGCGA AUAC G
GCGACACAUCAACAACCA A U^ U U - UAAUAAUUUUCUUAAACAGAAA
150 140 130 120 110 100 90 80 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Star sequence |
Gpa-Mir-965_5p* |
| mirBase accession | None |
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| Sequence |
0- GGGGUGACGCUGUACGCUGUAUG -23
Get sequence
|
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| Mature sequence |
Gpa-Mir-965_3p |
| mirBase accession | None |
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| Sequence |
70- UAAGCGUAUAGCUUUUCCCCUU -92
Get sequence
|
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