MirGeneDB 3.0
MirGeneDB ID

Hme-Mir-1000

Family name MIR-1000 (all species)
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-1000
Paralogues
Orthologues Aae-Mir-1000-P1  Aae-Mir-1000-P2  Aga-Mir-1000  Bge-Mir-1000  Dan-Mir-1000  Dlo-Mir-1000  Dme-Mir-1000  Dmo-Mir-1000  Dsi-Mir-1000  Dya-Mir-1000  Gpa-Mir-1000  Tca-Mir-1000 
Node of Origin (locus) Neoptera
Node of Origin (family) Neoptera
Genome context
(Hmel_1)		 HE669583: 87273-87327 [+] Ensembl
Seed UAUUGUC
Precursor
(pre-Mir +30nt flank)		 
CCUGAACACCGAAGGAAACACUUCUCGGCCAUAUUGUCCUGUCACAGCAGUAAGUUCAAUCUACUGCUGUAGCCGGACAUGCCGGUUGAGUUGUGUAUAACUACAAUUAAAGAAC
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Structure
        10          20        30        40        50       
CCUGAACACCGAAGGAA--|   UU       AUAU     U UC        AAGUU 
                   ACAC  CUCGGCC    UGUCC G  ACAGCAGU     \
                   UGUG  GAGUUGG    ACAGG C  UGUCGUCA     C
CAAGAAAUUAACAUCAAUA^   UU       CCGU     C GA        UCUAA 
   110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Fe Fe Fe Fe Ma Ma
Mature sequence

Hme-Mir-1000_5p
mirBase accessionMIMAT0024933
Sequence 
0- AUAUUGUCCUGUCACAGCAGU -21
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Star sequence

Hme-Mir-1000_3p*
mirBase accessionNone
Sequence 
34- UGCUGUAGCCGGACAUGCCGG -55
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