| MirGeneDB ID | Isc-Mir-5308 |
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| Family name |
MIR-5308 (all species) |
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| Species |
Deer tick (Ixodes scapularis) |
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| MiRBase ID |
isc-mir-5308
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
I. scapularis
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| Node of Origin (family) |
I. scapularis
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Genome context
(GCF_016920785.2_ASM1692078v2_ISC) |
NW_024609835.1: 64049689-64049747 [+]
Ensembl
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| Seed |
CUGUGCU |
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Precursor
(pre-Mir +30nt flank) |
CAGGAACUACGCAAUUGCACCAAAACCCUCUCUGUGCUGUGGAGGUAAUAUAUAGCUGUCAACAUAUAUACGUCCAAAGCACUGAGGGGGUUUUACUCACUCAUCAUCGAGCGAUCGCA
Get precursor sequence
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| Structure | 10 20 30 40 50
CAGGAACUACGCAAUUGCACC----| U G G A AGCU
AAAACCCUCUC GUGCU UGGA GUA UAUAU G
UUUUGGGGGAG CACGA ACCU CAU AUAUA U
ACGCUAGCGAGCUACUACUCACUCA^ U A G - CAAC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Isc-Mir-5308_5p |
| mirBase accession | MIMAT0021378 |
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| Sequence |
0- UCUGUGCUGUGGAGGUAAUAUAU -23
Get sequence
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| Co-mature sequence |
Isc-Mir-5308_3p |
| mirBase accession | None |
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| Sequence |
36- UAUACGUCCAAAGCACUGAGGGG -59
Get sequence
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