| MirGeneDB ID | Laf-Novel-2 |
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| Family name |
LAF-NOVEL-2 (all species) |
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| Species |
African bush elephant (Loxodonta africana) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
L. africana
|
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| Node of Origin (family) |
L. africana
|
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Genome context
(GCA_000001905.1_Loxafr3.0) |
GL010039.1: 17238176-17238242 [+]
UCSC
Ensembl
|
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| Seed |
UCUGCCC |
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Precursor
(pre-Mir +30nt flank) |
GGCUGUUACGUGGCUGCUGCCGAUGUCCAGGUGAGUGGCCUUUAGGGGCAGGUGGUAAAGCACCUAUGCCCUCGCUCUGCCCCUAAGUCACUCCCCUACCUUCCUGUGUCCCUAGGACCUGGUCUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGCUGUUACGUGGCUGCUGCCGAUGUCC--| U CU - GUAAAGCA
AGG GAGUGGC UUAGGGGCAG GUG C
UCC CUCACUG AAUCCCCGUC CGC C
UCUCUGGUCCAGGAUCCCUGUGUCCUUCCA^ C -- U UCCCGUAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Laf-Novel-2_5p* |
| mirBase accession | None |
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| Sequence |
0- GUGAGUGGCCUUUAGGGGCAGGUG -24
Get sequence
|
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| Mature sequence |
Laf-Novel-2_3p |
| mirBase accession | None |
|---|
| Sequence |
44- CUCUGCCCCUAAGUCACUCCCCU -67
Get sequence
|
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