| MirGeneDB ID | Lch-Mir-338-P1 |
|---|---|
| Family name | MIR-338 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-338-P2 |
| Orthologues | Ami-Mir-338-P1 Cli-Mir-338-P1 Cmi-Mir-338-P1 Cpi-Mir-338-P1 Dre-Mir-338-P1 Ebu-Mir-338-o1 Gmo-Mir-338-P1 Loc-Mir-338-P1 Mal-Mir-338-P1 Mun-Mir-338-P1 Sto-Mir-338-P1 Tgu-Mir-338-P1 Tni-Mir-338-P1 Xla-Mir-338-P1a Xla-Mir-338-P1b Xtr-Mir-338-P1 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127205.1: 990819-990878 [-] Ensembl |
| Seed | CCAGCAU |
| Precursor (pre-Mir +30nt flank) |
GUAUUGACCUGGCACAUGUUUGCCUCUGACAACAAUAUCCUGGUGCUGUCCGAGUAUGUGGAAAAGCUCCAGCAUCAGUGAUUUUGUUGUUAGAGGUGAAUUUAAGCAGCUAAACAUUUAGet precursor sequence |
| Structure | 10 20 30 40 50 60 GUAUUGACCUGGCACAU-- UG U -| UCC AUGU GUU CCUCUGACAACAA AUC CUGGUGCUG GAGU G UAA GGAGAUUGUUGUU UAG GACUACGAC CUCG G AUUUACAAAUCGACGAAUU GU U U^ --- AAAA . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Lch-Mir-338-P1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AACAAUAUCCUGGUGCUGUCCGAGU -25
Get sequence
|
| Mature sequence | Lch-Mir-338-P1_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- UCCAGCAUCAGUGAUUUUGUUGU -60
Get sequence
|
